Publications

  1. York WS, Agravat S, Aoki-Kinoshita KF, McBride R, Campbell MP, Costello CE, Dell A, Feizi T, Haslam SM, Karlsson N, Khoo KH, Kolarich D, Liu Y, Novotny M, Packer NH, Paulson JC, Rapp E, Ranzinger R, Rudd PM, Smith DF, Struwe WB, Tiemeyer M, Wells L, Zaia J, Kettner C. MIRAGE – The minimum information required for a glycomics experiment. Glycobiology, 24(5):402-406, 2014.
    (doi: 10.1093/glycob/cwu018)
  2.  Katayama T, Wilkinson MD, Aoki-Kinoshita KF, Kawashima S, Yamamoto Y, Yamaguchi A, Okamoto S, Kawano S, Kim JD, Wang Y, Wu H, Kano Y, Ono H, Bono H, Kocbek S, Aerts J, Akune Y, Antezana E, Arakawa K, Aranda B, Baran J, Bolleman J, Bonnal RJ, Buttigieg PL, Campbell MP, Chen YA, Chiba H, Cock PJ, Cohen KB, Constantin A, Duck G, Dumontier M, Fujisawa T, Fujiwara T, Goto N, Hoehndorf R, Igarashi Y, Itaya H, Ito M, Iwasaki W, Kala M, Katoda T, Kim T, Kokubu A, Komiyama Y, Kotera M, Laibe C, Lapp H, Lütteke T, Marshall MS, Mori T, Mori H, Morita M, Murakami K, Nakao M, Narimatsu H, Nishh ide H, Nishimura Y, Nystrom-Persson J, Ogishima S, Okamura Y, Okuda S, Oshita K, Packer NH, Prins P, Ranzinger R, Rocca-Serra P, Sansone S, Sawaki H, Shin SH, Splendiani A, Strozzi F, Tadaka S, Toukach P, Uchiyama I, Umezaki M, Vos R, Whetzel PL, Yamada I, Yamasaki C, Yamashita R, York WS, Zmasek CM, Kawamoto S, Takagi T. BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. J Biomed Semantics. 5(1):5, 2014.
    (URL: http://www.jbiomedsem.com/content/5/1/5)
  3. Campbell, M.P., Ranzinger, R., Luetteke, T., Mariethoz, J., Hayes, C.A., Zhang, J., Akune, Y., Aoki-Kinoshita, K.F., Damerell, D., Carta, G., York, W.S., Haslam, S.M., Narimatsu, H., Rudd, P.M., Karlsson, N.G., Packer, N.H. and Lisacek, F. Toolboxes for a standardised and systematic study of glycans. BMC Bioinformatics. 15(Suppl 1):S9, 2014.
    (URL: http://link.springer.com/article/10.1186/1471-2105-15-S1-S9#page-1)
  4. Aoki-Kinoshita, K.F., Bolleman, J., Campbell, M., Kawano, S., Kim, J.D., Luetteke, T., Matsubara, M., Okuda, S., Ranzinger, R., Sawaki, H., Shikanai, T., Shinmachi, D., Suzuki, Y., Toukach, P., Yamada, I., Packer, N.H., and Narimatsu, H. Introducing glycomics data into the Semantic Web, J. Biomed. Semantics. 4(1):39, 2013.
    (URL:  http://www.biomedcentral.com/content/pdf/2041-1480-4-39.pdf)
  5. Campbell, M.P., Peterson, R., Mariethoz, J., Gasteiger, E., Akune, Y., Aoki-Kinoshita, K.F., Lisacek, F. and Packer, N.H. UniCarbKB: building a knowledge platform for glycoproteomics. Nucleic Acids Res. 42(1):D215-D221, 2013.
    (URL: http://glycomics.ccrc.uga.edu/warren-workshop/pdf/WW4-Session8-Campbell.pdf)
  6. Aoki-Kinoshita, K.F., Sawaki, H., An, H.J., Campbell, M., Cao, Q., Cummings, R., Hsu, D., Kato, M., Kawasaki, T., Khoo, K.-H., Kim, J., Kolarich, D., Li, X., Matsubara, M., Okuda, S., Packer, N.H., Ranzinger, R., Shen, H., Shikanai, T., Shinmachi, D., Toukach, P., Yamada, I., Yamaguchi, Y., Yang, P., Ying, W., Yoo, J.S., Zhang, Y., Zhang, Y. and Narimatsu, H. The Fifth ACGG-DB Meeting Report: Towards an International Glycan Structure Repository. Glycobiology. 23(12):1422-1424, 2013.
    (URL: http://glycob.oxfordjournals.org/content/23/12/1422.full.pdf+html)
  7. Aoki-Kinoshita, K.F., Sawaki, H., An, H.J., Cho, J.W., Hsu, D., Kato, M., Kawano, S., Kawasaki, T., Khoo, K.-H., Kim, J., Kim, J.-D., Li, X., Lütteke, L., Okuda, S., Packer, N.H., Paulson, J.CC ., Raman, R., Ranzinger, R., Shen, H., Shikanai, T., Yamada, I., Yang, P., Yamaguchi, Y., Ying, W., Yoo, J.S., Zhang, Y., and Narimatsu, H. The Third ACGG-DB Meeting Report: Towards an international collaborative infrastructure for glycobioinformatics. Glycobiology. 23(2):144-146, 2013.
    (URL: http://glycob.oxfordjournals.org/content/23/2/144)
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